Clinical Report Data
Clinical Reports¶
Clinical Reports, aka Summary of Findings (or SoFs) are the variants in the genome that the clinical scientist in the GMC / GLH has selected as being relevant to the patients phenotype.
Attention
Unlike Rare Disease referrals, for Cancer cases, the Clinical Report is created by the Genomics England Pipeline
For rare disease referrals, Clinical Reports can be created in either the DSS or the Interpretation Portal.
Users can create >1 clinical report for a referral, generally, the most recent clincial report is the most relevant
If a referral has one or more Clinical Reports generated, the response from the Interpretation Request will contain an array of Clinical Reports in the format of the Clincial Report.
"clinical_reports": [
{
"created_at": "2020-01-01T00:00:00.000000Z",
"exit_questionnaire": null,
"clinical_report_version": 1,
"valid": true,
"timestamp": 1111111111.11111,
"clinicalReportData": {...}
},
{
"created_at": "2020-02-02T00:00:00.000000",
"exit_questionnaire": null,
"clinical_report_version": 2,
"valid": true,
"timestamp": 999999999.99999,
"clinicalReportData": {...}
},
...
]
Because Clinical Reports can come from different sources (i.e. IP or a DSS) there will be differences in their content.
This section describes the format of the Clinical Report data from these different sources